Bioc2mlr 0.1.0
  • Reference
  • Articles
    • S4 to task conversion
    • Feature Selection CPO
    • V3_Benchmarking_Ablation
    • Bioc2mlr on steroids, resampling

Reference

All functions

Bioc2mlr

Bioc2mlr: Bioconductor S4 assay data containers coversion into mlr's input

functional_to_NonFunctional_task_function() next_F() task_classif_to_Unsupervised()

Functionals

Fun_MAE_to_taskFunc()

Convert MAE to mlr task

Fun_SE_to_taskFunc()

Convert SE to mlr task

limmaCPO()

Add together two numbers

whole_run_function() whole_run_MLR_function()

Helper post_processing functions

Func_update_args_univ_clusters() getTaskSubjectId() Func_extract_feature_name() Filter_M_Limma_eBayes_gene_REV_function() Filter_M_glm_gene_REV_function() Fun_Load_module_sets() F_assay_i_module_row_index() Filter_M_Limma_camera_Module_REV_function() Func_task_to_Passed_Features_DF_MaG() Func_Collapse_Data_by_module_names() cvglmnet_alternative_lambda.min_function()

Helper functions

F_PreProc_1_Univ_Only_Train_MaG() F_PreProc_3_UnivClust_Train_MaG() F_PreProc13_BOTH_Predict_MaG()

Customized train and predict functions for a customized preprocessing wrapper

Fun_lrn_univ_only_makePrep_MaG() Fun_lrn_univ_Clusters_All_makePrep_MaG()

Customized preprocessing wrapper. wrappers around makePreprocWrapper: Univariate only; Univariate + Cluster

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